Couch Surfer Mac OS

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Index

Contents

  1. Installation

Important Note for macOS users: macOS machines require the installation of XQuartz 2.7.6.

Installing XQuartz

Mac Os Versions

To see what version of macOS you have, click Apple -> About This Mac. You should see something similar to the image below:

To see what version of XQuartz you have, click Applications -> Utilities -> XQuartz. Then X11 -> About X11

If necessary, download the XQuartz installation package and double click it to install.

  • XQuartz 2.7.5 (macOS versions 10.6 - 10.9)

  • XQuartz 2.7.6 (macOS versions 10.10 and higher)

Installing FreeSurfer

Download the FreeSurfer installation package from this page. Double click the dmg then double click the freesurfer-Darwin-full.pkg to launch the installation wizard:

If you get this error:

Then you need to adjust your security settings to allow applications from 3rd party developers to be installed. To do this go to Apple -> System Preferences -> Security & Privacy -> General. Click the lock on the bottom left to make changes and under Allow applications downloaded from: select Anywhere.

After the package integrity has been verified, the introductory screen will appear. Click on Continue:

Next is the Read Me window. Click on Continue:

Next is the Software License Agreement window. Click on Continue:

Next is the Destination Select window. Click Change Install Location.. to change the default installation disk and folder (/Applications/freesurfer). Or click Install to go with default:

Download

You may need to enter you password. The installation process will begin to write files and will take a few minutes to complete.

To begin using freesurfer, open a terminal window. The Terminal application is found under Applications -> Utilities -> Terminal:

Type the following lines in the terminal window to source the freesurfer environment:

After you source freesurfer you should see some output similar to the window below:

If you use freesurfer frequently and want to avoid typing the above lines of code every time you open a terminal window, you can create a file called .profile in your home directory which contains those two line. This will cause the terminal window to automatically source freesurfer every time it is opened.

At this point you are ready to begin using the freesurfer software. If you haven't done so already, obtain a license, and copy the license.txt file into your $FREESURFER_HOME (Applications/freesurfer) directory.

See the this page for some example commands to test that FreeSurfer is installed and running properly.

If you receive the following error when running the test_commands.sh.15 script: Anx mac os.

Then, you need to install a Freeview patch to have this work with your Mac OS version. Download the patch (~33 MB) from /autofs/cluster/pubftp/dist/freesurfer/6.0.0-patch/Freeview_6_0_0_MacOS_patch.zip follow the following instructions:

Couch Surfer Mac Os Download

1)To download the patch, follow instructions on using the ftp file exchange from this wiki page.

2) Remove your existing Freeview.app application bundle by sending it to the trash (and then emptying the trash).You can also do this from the terminal by cd'ing to the top-level ./freesurfer subdirectory and then doing

3) Copy the new Freeview.app.zip to where your old Freeview.app was located and uncompress it (so it becomes the replacement Freeview.app in your current FreeSurfer installation).

4) Remove ./freesurfer/lib/gcc/lib/libgomp.1.dylib from your existing freesurfer installation.

5) Copy the ./freesurfer/lib/gcc/lib/libgomp.1.dylib from the patch archive to /freesurfer/lib/gcc/lib in your current freesurfer installtion.

Couch Surfer Mac Os X

6) Try running the Freeview.app and loading a volume with it.

I browse the web a lot on my htpc. Modern browsers do a great job of zooming, so it's generally a pleasant enough experience.
Unfortunately the browsers have mostly fixed (and small) ui chrome.
Looking around, I've found a few dedicated htpc browsers - but I don't want that. I use a regular keyboard and touchpad, onscreen keyboards etc tailored towards users without a proper keyboard are simply annoyances for me. A plugin or hack that allowed me to scale the FF/Chrome ui arbitrarily would be perfect, but searches have come up empty..
Any suggestions?





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